A B C D E F G I M N O P R S T V Y Z

A

a - Variable in class org.kew.rmf.transformers.A2BTransformer

A2BTransformer - Class in org.kew.rmf.transformers

A generic transformer that searches for all occurrences of a pattern (regEx) `a` in a string and replaces each with a string `b`; It takes two optional parameters, `removeMultipleWhitespaces` (default true) and `trimIt` (default true)

A2BTransformer() - Constructor for class org.kew.rmf.transformers.A2BTransformer

ADDITIONAL_REPLACEMENTS - Static variable in class org.kew.rmf.transformers.NormaliseDiacritsTransformer

ALPHANUMDIAC - Variable in class org.kew.rmf.transformers.RegexDefCollection

assessCollationStructure(String) - Static method in class org.kew.rmf.transformers.collations.CollationStructureTransformer

assessCollationStructure(String) - Static method in class org.kew.rmf.transformers.collations.ipni.CollationUtils

assessCollationStructure(String) - Static method in class org.kew.rmf.transformers.collations.wcs.CollationUtils

B

b - Variable in class org.kew.rmf.transformers.A2BTransformer

C

CapitalLettersExtractor - Class in org.kew.rmf.transformers

CapitalLettersExtractor returns only the capital letters in a string.

CapitalLettersExtractor() - Constructor for class org.kew.rmf.transformers.CapitalLettersExtractor

CleanedPubAuthors - Class in org.kew.rmf.transformers.authors

Cleans ex (StripExAuthor) after in (StripInAuthor) after removing the basionym (StripBasionymAuthor).

CleanedPubAuthors() - Constructor for class org.kew.rmf.transformers.authors.CleanedPubAuthors

CollationStructureTransformer - Class in org.kew.rmf.transformers.collations

CollationStructureTransformer() - Constructor for class org.kew.rmf.transformers.collations.CollationStructureTransformer

CollationUtils - Class in org.kew.rmf.transformers.collations.ipni

CollationUtils() - Constructor for class org.kew.rmf.transformers.collations.ipni.CollationUtils

CollationUtils - Class in org.kew.rmf.transformers.collations.wcs

CollationUtils() - Constructor for class org.kew.rmf.transformers.collations.wcs.CollationUtils

CompositeTransformer - Class in org.kew.rmf.transformers

A CompositeTransformer can have other transformers and executes them in order on the given string.

CompositeTransformer() - Constructor for class org.kew.rmf.transformers.CompositeTransformer

CURLY_BRACKETS_AND_CONTENT - Variable in class org.kew.rmf.transformers.RegexDefCollection

D

dictionary - Variable in class org.kew.rmf.transformers.DictionaryTransformer

Dictionary - Interface in org.kew.rmf.utils

A Dictionary is a Map of String to String.

DictionaryRegexTransformer - Class in org.kew.rmf.transformers

Uses a Dictionary object of which it iterates over the keys to use each as a regular expression; if the pattern matches, it transforms the string accordingly returning the corresponding value of the Dictionary.

DictionaryRegexTransformer() - Constructor for class org.kew.rmf.transformers.DictionaryRegexTransformer

DictionaryTransformer - Class in org.kew.rmf.transformers

Uses a Dictionary object to lookup a string in its keys and returns the value if the key is found.

DictionaryTransformer() - Constructor for class org.kew.rmf.transformers.DictionaryTransformer

DotFDotCleaner - Class in org.kew.rmf.transformers.authors

Removes " f.", ".f." after any alphanumeric Characters (incl.

DotFDotCleaner() - Constructor for class org.kew.rmf.transformers.authors.DotFDotCleaner

E

entrySet() - Method in interface org.kew.rmf.utils.Dictionary

EpithetTransformer - Class in org.kew.rmf.transformers

This transformer canonicalises epithets

EpithetTransformer() - Constructor for class org.kew.rmf.transformers.EpithetTransformer

EX_MARKER - Variable in class org.kew.rmf.transformers.RegexDefCollection

EX_MARKER_REGEX - Variable in class org.kew.rmf.transformers.RegexDefCollection

F

FakeHybridSignCleaner - Class in org.kew.rmf.transformers

Deletes X and x that seem to be meant as hybrid signs X and x can be at the beginning of a string followed by a whitespace or anywhere in the string if surrounded by white-spaces.

FakeHybridSignCleaner() - Constructor for class org.kew.rmf.transformers.FakeHybridSignCleaner

G

get(String) - Method in interface org.kew.rmf.utils.Dictionary

getA() - Method in class org.kew.rmf.transformers.A2BTransformer

getA() - Method in class org.kew.rmf.transformers.CapitalLettersExtractor

getA() - Method in class org.kew.rmf.transformers.FakeHybridSignCleaner

getA() - Method in class org.kew.rmf.transformers.RemoveBracketedTextTransformer

getA() - Method in class org.kew.rmf.transformers.SafeStripNonAlphanumericsTransformer

getA() - Method in class org.kew.rmf.transformers.SafeStripNonAlphasTransformer

getA() - Method in class org.kew.rmf.transformers.StripNonNumericCharactersTransformer

getB() - Method in class org.kew.rmf.transformers.A2BTransformer

getB() - Method in class org.kew.rmf.transformers.CapitalLettersExtractor

getB() - Method in class org.kew.rmf.transformers.FakeHybridSignCleaner

getB() - Method in class org.kew.rmf.transformers.StripNonNumericCharactersTransformer

getDictionary() - Method in class org.kew.rmf.transformers.DictionaryRegexTransformer

getDictionary() - Method in class org.kew.rmf.transformers.DictionaryTransformer

getRegex() - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

getReplaceWith() - Method in class org.kew.rmf.transformers.SafeStripNonAlphanumericsTransformer

getReplaceWith() - Method in class org.kew.rmf.transformers.SafeStripNonAlphasTransformer

getShrinkTo() - Method in class org.kew.rmf.transformers.authors.ShrunkAuthors

getShrinkTo() - Method in class org.kew.rmf.transformers.authors.ShrunkPubAuthors

getShrinkTo() - Method in class org.kew.rmf.transformers.StringShrinker

getTransformers() - Method in class org.kew.rmf.transformers.CompositeTransformer

I

IN_MARKER - Variable in class org.kew.rmf.transformers.RegexDefCollection

IN_MARKER_REGEX - Variable in class org.kew.rmf.transformers.RegexDefCollection

isMultiTransform() - Method in class org.kew.rmf.transformers.DictionaryRegexTransformer

isRemoveMultipleWhitespaces() - Method in class org.kew.rmf.transformers.A2BTransformer

isRemoveMultipleWhitespaces() - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

ISSUE_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

ISSUE_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

IssueExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

IssueExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.IssueExtractorTransformer

IssueExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

IssueExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.IssueExtractorTransformer

isTrimIt() - Method in class org.kew.rmf.transformers.A2BTransformer

isTrimIt() - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

M

main(String[]) - Static method in class org.kew.rmf.transformers.authors.StripBasionymAuthorTransformer

main(String[]) - Static method in class org.kew.rmf.transformers.authors.StripPublishingAuthorTransformer

main(String[]) - Static method in class org.kew.rmf.transformers.collations.ipni.CollationUtils

main(String[]) - Static method in class org.kew.rmf.transformers.collations.wcs.CollationUtils

N

NormaliseDiacritsTransformer - Class in org.kew.rmf.transformers

Converts a string to its normalised form using unicode's NFD form (http://unicode.org/reports/tr15/) adding an ASCII equivalent after any identified diacritical character) and then removes all non-ASCII characters from the string In addition to the characters defined by the unicode consortium the following characters are replaced: [[ADDITIONAL)_REPLACEMENTS]]

NormaliseDiacritsTransformer() - Constructor for class org.kew.rmf.transformers.NormaliseDiacritsTransformer

O

org.kew.rmf.transformers - package org.kew.rmf.transformers

org.kew.rmf.transformers.authors - package org.kew.rmf.transformers.authors

org.kew.rmf.transformers.collations - package org.kew.rmf.transformers.collations

org.kew.rmf.transformers.collations.ipni - package org.kew.rmf.transformers.collations.ipni

org.kew.rmf.transformers.collations.wcs - package org.kew.rmf.transformers.collations.wcs

org.kew.rmf.utils - package org.kew.rmf.utils

P

PAGE_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

PAGE_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

PageExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

PageExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.PageExtractorTransformer

PageExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

PageExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.PageExtractorTransformer

parsableCollation(String) - Static method in class org.kew.rmf.transformers.collations.ipni.CollationUtils

parsableCollation(String) - Static method in class org.kew.rmf.transformers.collations.wcs.CollationUtils

parseCollation(String) - Static method in class org.kew.rmf.transformers.collations.ipni.CollationUtils

parseCollation(String) - Static method in class org.kew.rmf.transformers.collations.wcs.CollationUtils

R

regex - Variable in class org.kew.rmf.transformers.RegexExtractorTransformer

regex - Variable in class org.kew.rmf.transformers.YearRangeExtractorTransformer

RegexDefCollection - Class in org.kew.rmf.transformers

A collection of regular expressions that are meaningful to the domain and/or are used multiple times.

RegexDefCollection() - Constructor for class org.kew.rmf.transformers.RegexDefCollection

RegexExtractorTransformer - Class in org.kew.rmf.transformers

A generic transformer that extracts all occurrences of a pattern (regEx) in a string It takes two optional parameters, `removeMultipleWhitespaces` (default true) and `trimIt` (default true)

RegexExtractorTransformer() - Constructor for class org.kew.rmf.transformers.RegexExtractorTransformer

RemoveBracketedTextTransformer - Class in org.kew.rmf.transformers

Removes all text in brackets (round, square and curly) incl.

RemoveBracketedTextTransformer() - Constructor for class org.kew.rmf.transformers.RemoveBracketedTextTransformer

RomanNumeralTransformer - Class in org.kew.rmf.transformers

This transformer splits a string into a series of words.

RomanNumeralTransformer() - Constructor for class org.kew.rmf.transformers.RomanNumeralTransformer

ROUND_BRACKETS_AND_CONTENT - Variable in class org.kew.rmf.transformers.RegexDefCollection

RULE_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

RULE_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

S

SafeStripNonAlphanumericsTransformer - Class in org.kew.rmf.transformers

This is just a best-practise chain of three transformations: (1) replaces diacritic characters with their ASCII equivalent (NormaliseDiacriticsTransformer) (2) replaces all non-alphanumeric characters with `b` (default: whitespace) (3) replaces multiple whitespace occurrences with one whitespace returns a trimmed result

SafeStripNonAlphanumericsTransformer() - Constructor for class org.kew.rmf.transformers.SafeStripNonAlphanumericsTransformer

SafeStripNonAlphasTransformer - Class in org.kew.rmf.transformers

This is just a best-practise chain of three transformations: (1) replaces diacritic characters with their ASCII equivalent (NormaliseDiacriticsTransformer) (2) replaces all non-ASCII characters with `b` (default: whitespace) (3) replaces multiple whitespace occurrences with one whitespace returns a trimmed result

SafeStripNonAlphasTransformer() - Constructor for class org.kew.rmf.transformers.SafeStripNonAlphasTransformer

SERIES_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

SERIES_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

SeriesExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

SeriesExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.SeriesExtractorTransformer

SeriesExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

SeriesExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.SeriesExtractorTransformer

setA(String) - Method in class org.kew.rmf.transformers.A2BTransformer

setB(String) - Method in class org.kew.rmf.transformers.A2BTransformer

setB(String) - Method in class org.kew.rmf.transformers.CapitalLettersExtractor

setDictionary(Dictionary) - Method in class org.kew.rmf.transformers.DictionaryRegexTransformer

setDictionary(Dictionary) - Method in class org.kew.rmf.transformers.DictionaryTransformer

setMultiTransform(boolean) - Method in class org.kew.rmf.transformers.DictionaryRegexTransformer

setRegex(String) - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

setRemoveMultipleWhitespaces(boolean) - Method in class org.kew.rmf.transformers.A2BTransformer

setRemoveMultipleWhitespaces(boolean) - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

setReplaceWith(String) - Method in class org.kew.rmf.transformers.SafeStripNonAlphanumericsTransformer

setReplaceWith(String) - Method in class org.kew.rmf.transformers.SafeStripNonAlphasTransformer

setShrinkTo(Integer) - Method in class org.kew.rmf.transformers.authors.ShrunkAuthors

setShrinkTo(Integer) - Method in class org.kew.rmf.transformers.authors.ShrunkPubAuthors

setShrinkTo(Integer) - Method in class org.kew.rmf.transformers.StringShrinker

setTransformers(List<Transformer>) - Method in class org.kew.rmf.transformers.CompositeTransformer

setTrimIt(boolean) - Method in class org.kew.rmf.transformers.A2BTransformer

setTrimIt(boolean) - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

ShrunkAuthors - Class in org.kew.rmf.transformers.authors

This transformer tries to identify *all* authors (accepts publishing-, basionym-, ex-, in-) of plant names in a string and returns a string where each of their surnames are shrunk/cropped to a length of `shrinkTo`.

ShrunkAuthors() - Constructor for class org.kew.rmf.transformers.authors.ShrunkAuthors

ShrunkPubAuthors - Class in org.kew.rmf.transformers.authors

This transformer tries to identify all publication authors of plant names in a string and returns a string where each of their surnames are shrunk/cropped to a length of `shrinkTo`.

ShrunkPubAuthors() - Constructor for class org.kew.rmf.transformers.authors.ShrunkPubAuthors

splitCollation(String) - Static method in class org.kew.rmf.transformers.collations.CollationStructureTransformer

SQUARE_BRACKETS_AND_CONTENT - Variable in class org.kew.rmf.transformers.RegexDefCollection

StringShrinker - Class in org.kew.rmf.transformers

Crops/shrinks a string to a length of `shrinkTo` characters.

StringShrinker(int) - Constructor for class org.kew.rmf.transformers.StringShrinker

StripBasionymAuthorTransformer - Class in org.kew.rmf.transformers.authors

This transformer translates author strings in the form "(Author1) Author2" to "Author2"

StripBasionymAuthorTransformer() - Constructor for class org.kew.rmf.transformers.authors.StripBasionymAuthorTransformer

StripExAuthorTransformer - Class in org.kew.rmf.transformers.authors

This transformer translates author strings in the form "Author1 ex Author2" to "Author2"

StripExAuthorTransformer() - Constructor for class org.kew.rmf.transformers.authors.StripExAuthorTransformer

StripInAuthorTransformer - Class in org.kew.rmf.transformers.authors

This transformer translates author strings in the form "Author1 in Author2" to "Author1"

StripInAuthorTransformer() - Constructor for class org.kew.rmf.transformers.authors.StripInAuthorTransformer

StripNonAlphabeticCharactersTransformer - Class in org.kew.rmf.transformers

Deprecated.

Only works on ASCII; use SafeStripNonAlphasTransformer instead.

StripNonAlphabeticCharactersTransformer() - Constructor for class org.kew.rmf.transformers.StripNonAlphabeticCharactersTransformer

Deprecated.

StripNonAlphanumericCharactersTransformer - Class in org.kew.rmf.transformers

Deprecated.

Only works on ASCII; use SafeStripNonAlphanumericsTransformer instead.

StripNonAlphanumericCharactersTransformer() - Constructor for class org.kew.rmf.transformers.StripNonAlphanumericCharactersTransformer

Deprecated.

StripNonNumericCharactersTransformer - Class in org.kew.rmf.transformers

This transformer strips non numeric characters

StripNonNumericCharactersTransformer() - Constructor for class org.kew.rmf.transformers.StripNonNumericCharactersTransformer

StripPublishingAuthorTransformer - Class in org.kew.rmf.transformers.authors

This transformer translates author strings in the form "(Author1) Author2" to "Author1"

StripPublishingAuthorTransformer() - Constructor for class org.kew.rmf.transformers.authors.StripPublishingAuthorTransformer

SurnameExtractor - Class in org.kew.rmf.transformers.authors

This transformer tries to identify all surnames of plant name authors in a string and deletes everything else.

SurnameExtractor() - Constructor for class org.kew.rmf.transformers.authors.SurnameExtractor

T

TAB_OR_FIG_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

TAB_OR_FIG_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

TabOrFigExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

TabOrFigExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.TabOrFigExtractorTransformer

TabOrFigExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

TabOrFigExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.TabOrFigExtractorTransformer

toRomanValue(int) - Static method in class org.kew.rmf.transformers.RomanNumeralTransformer

transform(String) - Method in class org.kew.rmf.transformers.A2BTransformer

transform(String) - Method in class org.kew.rmf.transformers.authors.CleanedPubAuthors

transform(String) - Method in class org.kew.rmf.transformers.authors.DotFDotCleaner

transform(String) - Method in class org.kew.rmf.transformers.authors.ShrunkAuthors

transform(String) - Method in class org.kew.rmf.transformers.authors.ShrunkPubAuthors

transform(String) - Method in class org.kew.rmf.transformers.authors.StripBasionymAuthorTransformer

transform(String) - Method in class org.kew.rmf.transformers.authors.StripExAuthorTransformer

transform(String) - Method in class org.kew.rmf.transformers.authors.StripInAuthorTransformer

transform(String) - Method in class org.kew.rmf.transformers.authors.StripPublishingAuthorTransformer

transform(String) - Method in class org.kew.rmf.transformers.authors.SurnameExtractor

transform(String) - Method in class org.kew.rmf.transformers.collations.CollationStructureTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.IssueExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.PageExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.SeriesExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.TabOrFigExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.VolExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.ipni.YearExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.IssueExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.PageExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.SeriesExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.TabOrFigExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.VolExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.collations.wcs.YearExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.CompositeTransformer

transform(String) - Method in class org.kew.rmf.transformers.DictionaryRegexTransformer

transform(String) - Method in class org.kew.rmf.transformers.DictionaryTransformer

transform(String) - Method in class org.kew.rmf.transformers.EpithetTransformer

transform(String) - Method in class org.kew.rmf.transformers.NormaliseDiacritsTransformer

transform(String) - Method in class org.kew.rmf.transformers.RegexExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.RomanNumeralTransformer

transform(String) - Method in class org.kew.rmf.transformers.SafeStripNonAlphanumericsTransformer

transform(String) - Method in class org.kew.rmf.transformers.SafeStripNonAlphasTransformer

transform(String) - Method in class org.kew.rmf.transformers.StringShrinker

transform(String) - Method in class org.kew.rmf.transformers.StripNonAlphabeticCharactersTransformer

Deprecated.

transform(String) - Method in class org.kew.rmf.transformers.StripNonAlphanumericCharactersTransformer

Deprecated.

transform(String) - Method in interface org.kew.rmf.transformers.Transformer

transform(String) - Method in class org.kew.rmf.transformers.YearRangeExtractorTransformer

transform(String) - Method in class org.kew.rmf.transformers.ZeroToBlankTransformer

TransformationException - Exception in org.kew.rmf.transformers

TransformationException() - Constructor for exception org.kew.rmf.transformers.TransformationException

TransformationException(String) - Constructor for exception org.kew.rmf.transformers.TransformationException

TransformationException(String, Throwable) - Constructor for exception org.kew.rmf.transformers.TransformationException

Transformer - Interface in org.kew.rmf.transformers

This interface defines the behaviour expected of Transformers

V

VOL_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

VOL_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

VolExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

VolExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.VolExtractorTransformer

VolExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

VolExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.VolExtractorTransformer

Y

YEAR_INDEX - Static variable in class org.kew.rmf.transformers.collations.ipni.CollationUtils

YEAR_INDEX - Static variable in class org.kew.rmf.transformers.collations.wcs.CollationUtils

YearExtractorTransformer - Class in org.kew.rmf.transformers.collations.ipni

YearExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.ipni.YearExtractorTransformer

YearExtractorTransformer - Class in org.kew.rmf.transformers.collations.wcs

YearExtractorTransformer() - Constructor for class org.kew.rmf.transformers.collations.wcs.YearExtractorTransformer

YearRangeExtractorTransformer - Class in org.kew.rmf.transformers

Extracts year ranges from arbitrary strings.

YearRangeExtractorTransformer() - Constructor for class org.kew.rmf.transformers.YearRangeExtractorTransformer

Z

ZeroToBlankTransformer - Class in org.kew.rmf.transformers

This transformer translates zeros to blanks

ZeroToBlankTransformer() - Constructor for class org.kew.rmf.transformers.ZeroToBlankTransformer

A B C D E F G I M N O P R S T V Y Z